The 2023 Chicken-egg HPC/DL Workshop
Porto Alegre - RS, Brazil — October 17th, 2023.
Paper deadline: August 28thSeptember 11th, 2023 (Anywhere on earth!)
Author notification: September 22ndSeptember 29th, 2023
Camera-ready submission: September 29thOctober 6th, 2023
Workshop Date: October 17th, 2023
Topics of interest include, but are not limited to:
Short-bio: Graduated in Electrical Engineering from the Pontifical Catholic University of Rio de Janeiro with a master's and a doctorate in Computer Engineering Systems from the Federal University of Rio de Janeiro. She is currently a researcher in the area of High-Performance Computing at the National Laboratory for Scientific Computing (LNCC), a professor at the Multidisciplinary Graduate Program at LNCC, a member of the Consultative Committee of the Supercomputer Santos Dumont, coordinates the LNCC National Center for High-Performance Processing (CENAPAD), and the High-Performance Processing Sector of LNCC, which has several collaborative projects in the area of High-Performance Computing. Her research focuses on High-Performance Computing, Parallel Programming, and scientific application performance optimizations.
The scientific gateway BioinfoPortal for bioinformatics applications is hosted in the National Laboratory for Scientific Computing (LNCC) and is coupled to the Santos Dumont (SDumont) supercomputer environment. BioinfoPortal offers a catalog of bioinformatics computational software that benefits from the parallel and distributed architecture offered by LNCC. Task submissions consume SDumont nodes shared by other supercomputer users; then, it is required to set the best configuration, defined by the best choice of the number of threads/nodes, to be allocated for every task submission. This talk presents research analysis using Deep Neural Networks to estimate the computational time required to execute bioinformatics software in several scenarios using a pre-configured number of nodes and threads. We aim to demonstrate the computational behavior of software in Bioinfoportal and which computational scenario can be chosen to execute software in SDumont efficiently. Results support that the neural networks can predict the most representative variable and identify the configuration with the lowest computational time. This way, BioinforPortal consuming time can lead to an efficient and green gateway, increasing Santos Dumont Supercomputing execution job throughput and decreasing job execution queue waiting time.
All paper submissions must be made through EasyChair.
Submission link: https://easychair.org/my/conference?conf=hpcdl23
General chairs:
Program Committee Chairs:
Program Committee: